SE1950369

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4412
  • Lotus japonicus
  • SE1950369
  • PIF/harbinger
  • To15
  • CM0141:172275-172673
  • TAA
  • AGAGCATCTCCAATGGTAGGAACTTATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                T  GAA       --    ACTTAACTCAATTTTTGTGAGCCCAAATTGCCACATAGGATTTAAGACACTCATAAGGTCTTCATGCACATTTCACTCTAGTGGTTAAGGTTTTATTTTACTTTTTGACTGGACCCACAGTACCCAATATATTTATATTATTTATTTCCCTCTCTAGTTTTTAC
  AGAGCATCTCCAATGG AG   CTTATTT  TGAG                                                                                                                                                                    
  |||||||||||||||| ||   |||||||  ||||                                                                                                                                                                    T
  TCTCGTAGAGGTTACC TC   GAATAAA  CCTG                                                                                                                                                                    
AA                -  -AG       AT    GAATTTTATTCTAGGCCTAGAATAATCTAGAGTGTTAACCTCGATAGGATGTACCGTACTCTAGAATCGTTTTCGATTCTAGGCACGGAATCGAGTCCATGAGAGTTTACACTCTAGAATTTATTTTATTATAAAAAAAGAGAGAAGAAGTTATGGTTTTGGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3