Plant MITE

SE1920371

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4414
Lotus japonicus
SE1920371
Mutator
M35
CM0200:134343-134583
TTAAATTTA
TAAATTTAGGTGACCCCTAATGTGAACCACTTTTAAAGTCGTCTAATTTTAGACCACTTTTTTTAACCTGCTATAACAGGTCAACACATCTTTTTTTAAAGAAATTTAATAT

Secondary structure and sequence

TSD TIR

5'

3'

T          T  -CC         A    C     AA  C  C        G     TTT    A   T C                  -C       A      TTT     ATGACAAA
 TAAATTTAGG GA   CCTAATGTG ACCA TTTTA  GT GT TAATTTTA ACCAC   TTTT ACC G TATAACAGGTCAACACAT  TTTTTTT AAGAAA   AATAT        
 |||||||||| ||   ||||||||| |||| |||||  || || |||||||| |||||   |||| ||| | ||||||||||||||||||  ||||||| ||||||   |||||        T
 ATTTAAATTC CT   GGATTATAC TGGT AAAAT  CA CA ATTAAAAT TGGTG   GAAA TGG C ATATTGTCCAGTTGTGTA  AAAAAAA TTCTTT   TTATA        
           C  CTT         G    A     -C  C  T        G     TAT    C   C C                  AT       A      --T     GTAATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920371

TTAAATTTAGGTGACCCCTAATGTGAACCACTTTTAAAGTCGTCTAATTTTAGACCACTTTTTTTAACCTGCTATAACAGGTCAACACATCTTTTTTTAAAGAAATTTAATATATGACAAATTTTTAATGATATTTTTTCTTAAAAAAAATAATGTGTTGACCTGTTATACCCGGTCAAAGTATGTGGTGTAAAATTATACCACCTAAAAATGGTGCATATTAGGTTCTCCCTTAAATTTA

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