SE1920373

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4416
  • Lotus japonicus
  • SE1920373
  • Mutator
  • M8
  • CM0909:602840-603336
  • AAAAAAGAA
  • GGCTTAAATGCACTTTTGGACCCTGATGTTT

Secondary structure and sequence

TSD    TIR
5'



3'
AAAAAAGAA                        G T    TAAC       A     CA     T     T                A      T          C C                                               A    GATA         -   T   TAAAA     ATTTAAAAAAAATGGCTTAAATGCACTTTTGGACCCTCAAGTTTACATTTTTTGCGATT
         GGCTTAAATGCACTTTTGGACCCT A GTTT    TTTTTGC ATTGT  ACCCT ATCTT TTTTTCTACGAATGGG ACCCTA TCTTTCAAAA G TGCACTGTTTACCCTTCCGTCCAAATCCGTCAAAAACTTGACGGAAC CGCT    TGGCCTTCC ACG GGA     GGGGG                                                           
         |||||||||||||||||||||||| | ||||    ||||||| |||||  ||||| ||||| |||||||||||||||| |||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||    ||||||||| ||| |||     |||||                                                            
         CCGAATTTACGTGAAAACCTGGGG T CAAA    AAAAACG TAACA  TGGGA TAGAA AAAAAGATGCTTACCT TGGGAT AGAAAGTTTT C ACGTGGCAAATGGGAAGGCAGGTTTAGGCAGTTTTTGAACTGCCTTG GTGA    ACCGGAAGG TGC CTT     TTTGC                                                           
AAGAAAAAA                        G T    TATA       C     AC     C     T                C      T          A A                                               G    ATGG         C   -   -CCCA     TACGTTGCAAAACTTTCTAATCCCAGAGGTAAGTTTGATTTTTATTCTAGTCCCAGTTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End