SE1950374

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4417
  • Lotus japonicus
  • SE1950374
  • PIF/harbinger
  • To12
  • CM0398:524752-525111
  • TAA
  • AGAGCATCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA         CCAATGGTA       ATGTTAAATA         AT          TA     AGAG  CATATTCAATTTAAACATGACAAATATGAGTATGTGAGAATAGATACTCCACACTAGACTTGAAAGATGAGATTGTATTTATTACAAGCACTTACAATTAATTAAAATGTAGATAAATAAT
  AGAGCATCT         ATATCTA          CATACTCAT  GAGTATCTAT  CCATT    TA                                                                                                                         
  |||||||||         |||||||          |||||||||  ||||||||||  |||||    ||                                                                                                                          
  TCTCGTAGA         TGTAGGT          GTATGAGTG  TTTATAGATG  TGTAA    TA                                                                                                                         
AA         ---------       ---------A         AT          --     ----  AAAAAGTTAAAAGGTATTACAGTGTAGTAGATGGGGTAAAATGATTGAAAAATGAGGTTGGGTTGTTGAGAATTTTCAAAGATATCACCTAGGGTGATAGTTGTAGTGTAAACATATAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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