SE1930377

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4420
  • Lotus japonicus
  • SE1930377
  • hAT
  • Hat31
  • CM0617:125850-126239
  • GTTGTAGC
  • GTTGTAGCTAGGACTGTTCATGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
                        TCGGT      CTT       -----   --                  AATTTTGGTTCGAGAGAACCGAACCGAACCGATATAGTATGGTTCGAACCGAACCGAACCGATTACAAATTTTGGTTAACCAGTTCGGTAAAATATGCATATTTATAGATGGTTCGAACCGAACCGAAC
GTTGTAGCTAGGACTGTTCATGGT     TCTTTG   GAACCGA     ACC  GAACCGAACCTGAACCAA                                                                                                                                 
||||||||||||||||||||||||     ||||||   |||||||     |||  ||||||||||||||||||                                                                                                                                  
CGATGTTGATCCTGACAAGTACCA     AGAGAC   CTTGGCT     TGG  CTTGGCTTGGCTTTTGGC                                                                                                                                 
                        -----      --T       TCGAT   TT                  TTGGCAAATTCTTGGCTTGGAAATTCTTGGCTTGGCTTGAGCTTGGATTTAACTTTTTGGCCAAGCCATTGGCTTGGTTTTATAGTTGATGGTTAAGTCCAAGCCAAGCCAAGCTTGGTATCATATAGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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