Plant MITE

SE1910380

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4423
Lotus japonicus
SE1910380
Tc1/Mariner
St4
CM0102:379765-380063
TA
TACTCCCTCCGTCCCTAATTATAAGCTAACATTG

Secondary structure and sequence

TSD TIR

5'

3'

             C                    -T   AATCACATTTATTAAGAAAGCCTTAATTGATGCATTGGTTTTTTAAAAAATGGTACAATCTTCCATATTTACCCCTATTTAAGTGGGTAGTACTAGGAGGAAAGAATAAAA
TACTCCCTCCGTC CTAATTATAAGCTAACATTG  AAA                                                                                                               
||||||||||||| ||||||||||||||||||||  |||                                                                                                                
ATGAGGGAGGCAG GATTAATATTCGATTGTAAC  TGG                                                                                                               
             A                    TC   ATACACCACAGTGATTTATATTCGATTGATACGTTTTCGATTATAAAAAAAGGTATAAACAGGAACGTAAATAACCAAAAGGTTAAGGTTTTAAAACTTTAACTTTGAGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1910380

TACTCCCTCCGTCCCTAATTATAAGCTAACATTGTAAAAATCACATTTATTAAGAAAGCCTTAATTGATGCATTGGTTTTTTAAAAAATGGTACAATCTTCCATATTTACCCCTATTTAAGTGGGTAGTACTAGGAGGAAAGAATAAAAGTGAGTTTCAATTTCAAAATTTTGGAATTGGAAAACCAATAAATGCAAGGACAAATATGGAAAAAAATATTAGCTTTTGCATAGTTAGCTTATATTTAGTGACACCACATAGGTCTCAATGTTAGCTTATAATTAGAGACGGAGGGAGTA

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