SE1910382

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4425
  • Lotus japonicus
  • SE1910382
  • Tc1/Mariner
  • St11
  • LjSGA_013133:1621-1938
  • TA
  • TACTCCCTCCGTTCCAAAATGTAAGTTGTTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
                       A          -----  - TTATATCATATTCCAAAATATAAGTTGTTTTGCAAAACCAATGCACTTTTTCTCTCTTTCTTCCTTATATACCCTCATTTAATATTATATATCTTAATTACCACCTTCAATTTTCACCT
TACTCCCTCCGTTCCAAAATGTA GTTGTTTTAG     AA T                                                                                                                       
||||||||||||||||||||||| ||||||||||     || |                                                                                                                        
ATGAGGGAGGCAAGGTTTTACAT CAACAAAATC     CG G                                                                                                                       
                       C          CAACA  T TAACAAATTCTCGAGTAATTAACTATTAAAAAAACTAATTTTATGGGGATAAATTTCAACACAATATAATTCCTCTCTCTTTACAATAATAACTAATTCACCTATCACTCTCAACACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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