SE1920385

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4428
  • Lotus japonicus
  • SE1920385
  • Mutator
  • M62
  • LjSGA_012462:219-448
  • AAAGTCTAA
  • AGTCTAAGGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
AA  T  AA    AATT   --     - CCTCATTGTATGGCACACGACTGACGCGATTTGACGTGTATCAATAGGAAACCAACATCTGACAGTATATTTGAATTTTTGTTTCAT
  AG CT  GGTG    CTA  CCATA C                                                                                       
  || ||  ||||    |||  ||||| |                                                                                       T
  TC GA  CCAC    GAT  TATGG G                                                                                       
AA  T  AA    GAAC   CC     T TTGTGAATCAACCCCATACTTTGTTCTTCACTGCACCTGGTTATTGTAAATTCACACACAAAGAAGAAAAAGACTATATACAAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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