Plant MITE

SE1920388

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4431
Lotus japonicus
SE1920388
Mutator
M33
LjSGA_073095:234-486
TAATTTTTA
TTAGGGTTAATCCTCTACTTGGTCCCTGTGGTTGTGTGGCTGTCTGAAATTAGT

Secondary structure and sequence

TSD TIR

5'

3'

TAATTT            C            C                            CTCTCCC  A                             T               -CA     T GCC
      TTAGGGTTAATC TCTACTTGGTCC TGTGGTTGTGTGGCTGTCTGAAATTAGT       TG AAAATCTGAAAATCTAAGTTCTCGTGTTT GGAAAGTGTGTGGAG   GGTCC C   
      |||||||||||| |||||||||||| ||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||| |||||||||||||||   ||||| |    
      AATCCCAATTAG AGATGAACCAGG ACACCAACACACCGGCAGACTTTAATCA       GC TTTTAGACTTTTAGATTCAGGAGCACAAA CCTTTCACACACCTT   TCAGG G   
AGTTTT            T            T                            AATAAAA  C                             -               TAA     - AAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920388

TAATTTTTAGGGTTAATCCTCTACTTGGTCCCTGTGGTTGTGTGGCTGTCTGAAATTAGTCTCTCCCTGAAAAATCTGAAAATCTAAGTTCTCGTGTTTTGGAAAGTGTGTGGAGCAGGTCCTCGCCGAAGGGACTAATTTCCACACACTTTCCAAACACGAGGACTTAGATTTTCAGATTTTCCGAAAATAAACTAATTTCAGACGGCCACACAACCACATGGACCAAGTAGATGATTAACCCTAATTTTGA

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