SE1920390

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4433
  • Lotus japonicus
  • SE1920390
  • Mutator
  • M63
  • CM0432:1631454-1631878
  • TTTTCTCTT
  • GGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTCTCTT    AATT          CATATATTTTTTC    A        -------------CGT    TACTT   GT        T TT    -TCTTT   AA        ---TT   TGTTGCAATTTTTTTAAGAATTTAAGTTCGATGACTCAATTAACTAATTACATATTGTATTTAAGTTTGTTTATATTGTTCAATGCACGATTTGAAA
         GGTG    CTGTGGTACC             GGGT TGGTACCT                ATAG     TAA  TATAATTT G  ATTT      AAA  ATGGATGA     TAT                                                                                                 
         ||||    ||||||||||             |||| ||||||||                ||||     |||  |||||||| |  ||||      |||  ||||||||     |||                                                                                                  
         CCAC    GACACCATGG             TCCG ACCATGGG                TATC     ATT  ATGTTAAA C  TGAA      TTT  TACCTACT     ACG                                                                                                 
TTCTCTTTT    GAAC          AATTCGGTCTAAT    C        TCTTACTATATTTAAT    TTTTT   --        - -T    TTTTCT   AC        TCTAA   TTCCAAATTGTATCCACTCCGTACCTCTTTCTTCTAGACTGTTCTTTCCTAGAATCTACTAGAGAGTTTTAGCTTTCAATTTGAATTTTGGGATCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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