SE1920393

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4436
  • Lotus japonicus
  • SE1920393
  • Mutator
  • M4
  • LjT35O23:93857-94405
  • TTATAATTT
  • TTATAATTTGGCTTAATTGCACTTTTGGTCCCCCAACTATTGCCTTCTTGCAAAAATCGTCCCCAAACTTCAAAACTAGCAAAAAACGACCTCCAACTATACATGTCGTTGCACTTTTGGTCTGCCGTTTGCCTTCCGTGAGAAAACTAACGTGAGAAGCTGATGTGGCTCCCTCACACGTGTCTCACGTGACTTTCTTCAGAGAGCTTGATGACTGGACAAGTCACATGCTTTTCACGTGACTCTGAAAGG

Secondary structure and sequence

TSD    TIR
5'



3'
         TTT                        C                CA                  C    C            A                                    C          C                      C     T    C                                                                                 CTCCA   GTCATCTCCCTCCTCC
   TTATAA   GGCTTAATTGCACTTTTGGTCCCC AACTATTGCCTTCTTG  AAAATCGTCCCCAAACTT AAAA TAGCAAAAAACG CCTCCAACTATACATGTCGTTGCACTTTTGGTCTGC GTTTGCCTTC GTGAGAAAACTAACGTGAGAAG TGATG GGCT CCTCACACGTGTCTCACGTGACTTTCTTCAGAGAGCTTGATGACTGGACAAGTCACATGCTTTTCACGTGACTCTGAAAGG     ACG                
   ||||||   |||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||                A
   AATATT   CCGAATTAACGTGAAAACCAGGGG TTGATAACGGAAGGAC  TTTTAGCAGGGGTTTGAA TTTT ATCGTTTTTTGC GGAGGTTGATATGTACAGCAACGTGAAAACCAGACG CAAACGGAAG CACTTTTTTGATTGCACTCTTC ACTAC CCGA GGAGTGTGCACAGAGTGTACTGAAAGAAGTCTCTCGAACTACTGACCTGTTCAGTGTACGAAGAGTGCACTGAGATTTTCC     AAG                
TTT      ---                        A                AC                  A    A            A                                    T          A                      A     -    A                                                                                 ---CA   TATCACTTCTTCTGCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End