SE1950396

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4439
  • Lotus japonicus
  • SE1950396
  • PIF/harbinger
  • To26
  • CM1823:25084-25400
  • TGA
  • AGTGTGTGTTTGGATTTCAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TG  T         GA       TTG    ATAAAATTTGAGTGAATGTGAGTTTACAAAACAGAGTTTGAATCAAAGTGAGTTAGTTGTAATGTGATTTATGTTTGGATACTTTTATTTCAAAATAGAGTTTGGGGTTGAAAGTATGTTGGATGAATGT
  AG GTGTGTTTG  TTTCAGT   CAAA                                                                                                                                  
  || |||||||||  |||||||   ||||                                                                                                                                   
  TC CACACAAAC  AAAGTCA   ACCC                                                                                                                                  
AG  C         AA       ---    CGTAGGTTTTCATGAAAGTCCAGAATACATTGAAACATAGTGATACAAACCGTTTAATTTTTGGTGTGAGTGGGTTGGGTGAAAATTGGGGTTGGATTGAAAGTAGAGTTGAGAGGTTTAACAGTGAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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