Plant MITE

SE1910397

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4440
Lotus japonicus
SE1910397
Tc1/Mariner
St6
CM0237:10937-11205
TA
TACTCCCTCC

Secondary structure and sequence

TSD TIR

5'

3'

          -       T   ACTGTCCACTTAGTGAAGATGCACACAAATTAAGAATGCAATAAATTTTGTTAACTTTTTAAAATATTATATGCATTTTCCTATTTTACCCTATAAAATACATTATTATCTCT
TACTCCCTCC GTTTCAA ATA                                                                                                                 
|||||||||| ||||||| |||                                                                                                                 C
ATGAGGGAGG AGAGATT TAT                                                                                                                 
          C       -   TAACAGGTGAATCTCTCTTTAAAAAACAAAGTTTTATTGATAGGTGAATATTAAGGTTACTTCGTAATTAACTATAAAAAGATGTATTACACGGATATCCATTTTATTTAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1910397

TACTCCCTCCGTTTCAATATAACTGTCCACTTAGTGAAGATGCACACAAATTAAGAATGCAATAAATTTTGTTAACTTTTTAAAATATTATATGCATTTTCCTATTTTACCCTATAAAATACATTATTATCTCTCATAATTTATTTTACCTATAGGCACATTATGTAGAAAAATATCAATTAATGCTTCATTGGAATTATAAGTGGATAGTTATTTTGAAACAAAAAATTTCTCTCTAAGTGGACAATTATTTAGAGACGGAGGGAGTA

Copy Cancel