Plant MITE

SE1930399

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4442
Lotus japonicus
SE1930399
hAT
Hat8
LjSGA_028543:1147-1452
CCTTCACC
CAGGGGCGGACC

Secondary structure and sequence

TSD TIR

5'

3'

CCTTCACC   G      -  TATGTTG    GA GGGGTTCATCTGAACCCCTGAACCAAAAAAATTGCACTTAATTTTCTATATAATTTTTTTTTGAACCTTCTGAAAATTTTAAATTATACTAGTAGATTAAGTTTTGCACCTATTTGCACCA
        CAG GGCGGA CC       TGGT  G                                                                                                                         
        ||| |||||| ||       ||||  |                                                                                                                         A
        GTC CCGCCT GG       TGGG  G                                                                                                                         
CCACTTCC   A      A  ----TCC    -- CCCCAATCCCCCAAGTTTAAAAAATTTACTTGTGTAGTCATTTTTATATTAAATTTTGTTGAAATTATACAAAATATGTACTATTTAATATGTTCAGTATCAACACGTTTATCCACCCGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1930399

CCTTCACCCAGGGGCGGACCTATGTTGTGGTGAGGGGGTTCATCTGAACCCCTGAACCAAAAAAATTGCACTTAATTTTCTATATAATTTTTTTTTGAACCTTCTGAAAATTTTAAATTATACTAGTAGATTAAGTTTTGCACCTATTTGCACCAAAGGCCCACCTATTTGCACAACTATGACTTGTATAATTTATCATGTATAAAACATATTAAAGTTGTTTTAAATTATATTTTTACTGATGTGTTCATTTAAAAAATTTGAACCCCCTAACCCCGGGGTCCTGGATCCGCCACTGCCTTCACC

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