Plant MITE

SE1930402

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4445
Lotus japonicus
SE1930402
hAT
Hat24
CM0435:560332-561066
GGTTGAAG
TTGAAGTAGGGGTGTACAAG

Secondary structure and sequence

TSD TIR

5'

3'

GG    AG              GGA     -   G       TTGGTTAACCCTAACCCGGCCCTAAATGTTGATCGGGCCAATTCATAGACCCTAACCCGTCCCTAGACCCGAAGCAACCCGACATTATGCGGGTCCAATTTAGGACGGGTCTATGTAGGACGGGACCGGGTTGGTCTGAGGGACAATAAGTTTAAGACTATTTGATACTAATTGTAAAATTTAAAGATAATAACATACTAAAAGAGTTATAAGTTGGAACTATTTTTTAGAAGAAATAACTTGAAAGGATCCAATTCTTTCATAATCTATTGCACTTGAGATGTTTACATTTTGTTTGATCATTTCTTCACTTGTCTCACATATGCAT
  TTGA  TAGGGGTGTACAAG   CGGGT TGG ACGGGTT                                                                                                                                                                                                                                                                                                                                        
  ||||  ||||||||||||||   ||||| ||| |||||||                                                                                                                                                                                                                                                                                                                                         
  AGTT  ATCCCCACATGTTC   TGGGC GGG ATGGGCG                                                                                                                                                                                                                                                                                                                                        
GA    GG              ---     C   -       GTTGGGCAGGGCCGGGTTCGGAAATCCCGGCCCAAGTTGGGCCAGGCTAGTAATTTTCTCTGGCCCAAGCCCAACTAGAAGCTCAATGGGCTGAAGCCCATCCCAGCCCAAGCCCAACTGTGAGCCCAGTGGGCCGGGCAGGGTGTATATATAAAATATTTTAAAATTAAACAATATTACTAATTTTACACTATGTACCACGAGTTTAAATAGAATATGGTACATCTACTCTAATTTTACAAATTGTAGATGGAATACTTAACTTATTTGCAACCAGTTTGATACCTGTGAAAGTACGAGATTGTTCTCTTTTAGTACACACACATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1930402

GGTTGAAGTAGGGGTGTACAAGGGACGGGTTGGGACGGGTTTTGGTTAACCCTAACCCGGCCCTAAATGTTGATCGGGCCAATTCATAGACCCTAACCCGTCCCTAGACCCGAAGCAACCCGACATTATGCGGGTCCAATTTAGGACGGGTCTATGTAGGACGGGACCGGGTTGGTCTGAGGGACAATAAGTTTAAGACTATTTGATACTAATTGTAAAATTTAAAGATAATAACATACTAAAAGAGTTATAAGTTGGAACTATTTTTTAGAAGAAATAACTTGAAAGGATCCAATTCTTTCATAATCTATTGCACTTGAGATGTTTACATTTTGTTTGATCATTTCTTCACTTGTCTCACATATGCATAATACACACACATGATTTTCTCTTGTTAGAGCATGAAAGTGTCCATAGTTTGACCAACGTTTATTCAATTCATAAGGTAGATGTTAAACATTTTAATCTCATCTACATGGTATAAGATAAATTTGAGCACCATGTATCACATTTTAATCATTATAACAAATTAAAATTTTATAAAATATATATGTGGGACGGGCCGGGTGACCCGAGTGTCAACCCGAACCCGACCCTACCCGAAGTCGGGTAACTCGAAGATCAACCCGAACCCGGTCTCTTTTAATGATCGGACCGGGTTGAACCCGGCCCTAAAGGCTTGGGCCGGGACGGGTTGGCGGGTAGGGCCGGGTCTTGTACACCCCTAGGTTGAAG

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