SE1920404

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4447
  • Lotus japonicus
  • SE1920404
  • Mutator
  • M64
  • LjSGA_118807:102-516
  • AAAATTTAT
  • AAATTTATGGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
 A      A     CTTG    CGATTA    AATCCAGATCAAGGCGTGATACCCTAAAATTATATAGAGCAATAGAAAACATACAATTCAAACTTAGAGGAAGAGGATGGAGAAAGATTTAGAGGTTTAATATGGGTGGAGCATGAAGGAAGAAGATCCGGACATTAAAGGAATTTAGATGATCTCTCAAAATTGCAAATTGAACTAA
  AAATTT TGGTG    CTGT      CCTT                                                                                                                                                                                  
  |||||| |||||    ||||      ||||                                                                                                                                                                                   
  TTTAAA ACCAT    GACA      TGGG                                                                                                                                                                                  
TA      -     TTAA    ---CCA    TCTTAAAAAAGACCCACACCATGGGATACACTATAAAATTCAATATTAAAACAACTTTTTTCCACTTTCCTAAATGATAACGTTAAAATTTTTCCAATTATTAGCTGAATTACTTATTATTGTATGTGAAAAATTCGAACAAATACAATATATCATGTGTTATATTTTTAATGCCAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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