SE1920405

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4448
  • Lotus japonicus
  • SE1920405
  • Mutator
  • M65
  • CM0127:129018-129201
  • CTAATTTAT
  • TAATTTATGGCAATTTCTCTGGAACCCTTTCAAAAATGGAGGG

Secondary structure and sequence

TSD    TIR
5'



3'
C   TT  -T    A  T      A    T  C       -     TTCC   C T      -   G    CT     A    CTTTTTAAAATT
 TAA  TA  GGCA TT CTCTGG ACCC TT AAAAATG GAGGG    ATA C TTTAGT CAT TTTT  CCATA TAGA            
 |||  ||  |||| || |||||| |||| || ||||||| |||||    ||| | |||||| ||| ||||  ||||| ||||            G
 ATT  AT  CCGT AA GAGGCC TGGG AA TTTTTAT CTCCT    TAT G AAATCA GTA AAAA  GGTAT GTTT            
T   TT  TC    -  C      A    T  -       T     GTAT   A T      A   -    AT     -    CCAGCATAAACA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End