SE1920408

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4451
  • Lotus japonicus
  • SE1920408
  • Mutator
  • M16
  • LjT29B11:23575-23786
  • CTTTTTAAA
  • GAATTTAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTTTTAAA  A       TTAATA   C           CA              A       ---ATAG    -----      -  -GAAAATAA       A   AA
         GA TTTAATG      CAT GTTAGTGTAAA  ATTTTTACACAGGC TCCAATG       GCTG     TCAAAT CA         ATTTTTA TTT  
         || |||||||      ||| |||||||||||  |||||||||||||| |||||||       ||||     |||||| ||         ||||||| |||   
         CT AAATTAC      GTG CAGTCACATTT  TAAAAATGTGTCTG AGGTTAT       CGGT     AGTTTA GT         TAAAAAT AAA  
AAATTTTTC  C       CAACAC   A           TA              C       CAACTTA    GCATA      C  AAATACTAG       A   TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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