Plant MITE

SE1920410

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4453
Lotus japonicus
SE1920410
Mutator
M64
CM0124:332132-332546
CTTTTTTTT
GGT

Secondary structure and sequence

TSD TIR

5'

3'

CTTTTTTTT   AAATT          CATAAATTT   T       A      C   A     -T   A   ----------ATTATTA  G     ----   AACGTAAATTTTACATTTTCAAATTTTATTTTACTTTTCAATTAACTTCATTCCATAGAATTCACTTTTTAATGAAAAATGGACGAGTAGTGAAGATGAACAATGGTGGT
         GGT     CTGTGGTACC         TTC GGGTGTG TACCCA AAT AGTTA  TTA TAG                 CT TGTTG    TTC                                                                                                              
         |||     ||||||||||         ||| ||||||| |||||| ||| |||||  ||| |||                 || |||||    |||                                                                                                              A
         CCA     GACACCATGG         AAG TCCGCAC ATGGGT TTA TCAAT  AAT ATC                 CA ATTTT    CTA                                                                                                              
TTTTTTTTC   CGAAC          AACTGAGTT   T       C      T   C     TT   C   ATTTTTTAATATATAGG  -     CAAG   AAATAATATAGTATCATTACATCATAAGGTAACAATTTCTACACTTTAAACAAACAACACAAAAAATTGGAAACAATAAGGCAGTTTATACCAGTAAACTGCGCGTAGCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920410

CTTTTTTTTGGTAAATTCTGTGGTACCCATAAATTTTTCTGGGTGTGATACCCACAATAAGTTATTTAATAGATTATTACTGTGTTGTTCAACGTAAATTTTACATTTTCAAATTTTATTTTACTTTTCAATTAACTTCATTCCATAGAATTCACTTTTTAATGAAAAATGGACGAGTAGTGAAGATGAACAATGGTGGTACCGATGCGCGTCAAATGACCATATTTGACGGAATAACAAAGGTTAAAAAACACAACAAACAAATTTCACATCTTTAACAATGGAATACTACATTACTATGATATAATAAAATCGAACTTTTAACGGATATATAATTTTTTACTACTAATTTAACTCATTTTGGGTACCACGCCTTGAATTGAGTCAAGGTACCACAGCAAGCACCCTTTTTTTT

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