SE1920411

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4454
  • Lotus japonicus
  • SE1920411
  • Mutator
  • M36
  • CM0163:298641-298910
  • ATTTAACAA
  • GGATTTGGATCCTCTCCATCCAGCTTCTCTCCATCCTCTCTCCATCCAAATCTGAGCTATTGATTTAGAAATTTAAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTAACAA                                                  -                A   A        -     ATCAATTTAAGAAGAGAGAGAAAAAATGAATTATATTTAAA
         GGATTTGGATCCTCTCCATCCAGCTTCTCTCCATCCTCTCTCCATCCAAA TCTGAGCTATTGATTT GAA TTTAAAGG CTTGG                                         
         |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||                                          
         CCTAAACCTAGGAGAGGTAGGTTGAAGAGAGGTAGGGGAGAGGTAGGTTT AGACTCGGTAATTAAA CTT AAATTTCC CTCCT                                         
AACAATTTA                                                  T                A   A        A     AATCAAGTACAAAAGAGAGAGAAGAATTTAACTAAGTTCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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