SE1920414

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4457
  • Lotus japonicus
  • SE1920414
  • Mutator
  • M66
  • CM0029:8268-8683
  • AAAACATTA
  • GGTG

Secondary structure and sequence

TSD    TIR
5'



3'
AAAACATTA    TTTG  A        TAACCCAAATCAA            AAAA    A     C    --ATAAAAAAGTAT      G   ---   T   G  ----   AT  -   ---C T   -  TGCAACATTTCATTCATAGAGACATGAGATTTGTAGGTTGTGTTTTTTTAGGCTTTGTTCATCCGTCAATCATGGTTATTTT
         GGTG    CT TGGTACCT             GGTATGGTACCC    TGAG TAATT AATA              GCACAA TTA   TAA TTT AT    GTT  TT TAT    G AGT GA                                                                                  
         ||||    || ||||||||             ||||||||||||    |||| ||||| ||||              |||||| |||   ||| ||| ||    |||  || |||    | ||| ||                                                                                  A
         CCAT    GA ACCATGGG             CCATACTATGGG    ACTC ATTAA TTAT              AAAAAA TCC   TAA AAT GT    GCG  TA AGT    G GAT AG                                                                                  
ATTACAAAA    TTAA  C        TATTTTATAAAAC            CGTA    -     A    CTACTAATAATATA      -   ATT   -   -  AAAA   --  A   GAAA -   A  TTAATTAAAGTAGAGTACTTTAAACAAAAAATTACTTTTTACTAAATCAACATTTCTACTTGCTAATACCAACTCTACGCGC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End