Plant MITE

SE1950419

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4462
Lotus japonicus
SE1950419
PIF/harbinger
To27
CM0696:911855-912265
TTA
AGGGGGCGTTTGTTAGA

Secondary structure and sequence

TSD TIR

5'

3'

TT            T    -      -----      TGATA  CAGGAATCTTAATCCTAGGAATATTTTGATGGAAATGTTATTCCCGGGCATCTTCTTAAAAAAGTGTTTGGTTAATAAATTTCATTCCCGGGTATGTTCTTAATAATTTCTTAATTAAAATATTTAAAAATATAAAATTTGAAGTAAAAAGAAAAGTTAGTGGGAAA
  AGGGGGCGTTTG TAGA GGTTTT     AGAAAA     CC                                                                                                                                                                       
  |||||||||||| |||| ||||||     ||||||     ||                                                                                                                                                                        
  TCCCCCGCAAAC ATCT CCCTTG     TGTAAG     GG                                                                                                                                                                       
AT            C    T      AAATT      -----  CCCATTCATTCCAACCCTTACATTGTAAGGGTACAAACCATGTTCAAAGTCTTTTTAATAAGGGCCCATAATTTCTAAGAGTCCGTACGATAAATGTAACAAAAAGAGGTTTGAAGTAAGGGTTCAAGTTCCTACCCATAGAATGTAAGGGTACCCTTACCTTCAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1950419

TTAGGGGGCGTTTGTTAGAGGTTTTAGAAAATGATACCCAGGAATCTTAATCCTAGGAATATTTTGATGGAAATGTTATTCCCGGGCATCTTCTTAAAAAAGTGTTTGGTTAATAAATTTCATTCCCGGGTATGTTCTTAATAATTTCTTAATTAAAATATTTAAAAATATAAAATTTGAAGTAAAAAGAAAAGTTAGTGGGAAATAACTTCCATTCCCATGGGAATGTAAGATACCCATCCTTGAACTTGGGAATGAAGTTTGGAGAAAAACAATGTAAATAGCATGCCTGAGAATCTTTAATACCCGGGAATAATTTTTCTGAAACTTGTACCAAACATGGGAATGTTACATTCCCAACCTTACTTACCCGGGAATGTTTAAAGTTCCCTTCTACCAAACGCCCCCTTA

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