SE1920420

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4463
  • Lotus japonicus
  • SE1920420
  • Mutator
  • M1
  • CM0423:395476-395685
  • TACAATATA
  • TAGGGTTAAAGGTCATATTAGTCCCTGTGTTTGTAAATGTGTTTAAATTTGGTCTCTTAGTCAAAAAATGACGTTTAGTGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TACAATA                                     T      AAA                      GA    T      GGTTTTCTTT  A   A
       TAGGGTTAAAGGTCATATTAGTCCCTGTGTTTGTAAA GTGTTT   TTTGGTCTCTTAGTCAAAAAAT  CGTT AGTGGC          AC GTT 
       ||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||||||  |||| ||||||          || ||| T
       ATCCCAATTTCCAGTATAATCAGGGACACAAACATTT CGCAAA   AAACCAGGGAGTCAGTTTTTTG  GCGG TCATTG          TG CGG 
ATATAAC                                     T      CTA                      --    -      ATATAATATT  G   T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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