Plant MITE

SE1950431

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4474
Lotus japonicus
SE1950431
PIF/harbinger
To13
LjSGA_014036:2830-3175
TTA
TAGGGTGTGTTTGG

Secondary structure and sequence

TSD TIR

5'

3'

T    -          AT   C      --   ------  CCT    C CGTTTAAAGACCTCAAACGTGATTTTTCCATCTCCATTGATGTTTGGATGTTAAATGTTGATCCAATTCTGGCCCCAGAATTGGATCCATCCTAACACAACAATTTGTTGCTTTAGCATCAATGTTGAT
 TAGG GTGTGTTTGG  GCA GTTGGA  TCA      GG   GATC A                                                                                                                                 
 |||| ||||||||||  ||| ||||||  |||      ||   |||| |                                                                                                                                 C
 ATTC CACACAAACC  GAG GCAAAT  TCT      AG   GGTC T                                                                                                                                 
     A          --   C      CA   TAACCT  ACC    - TAACCTAGACTATACTTAACCTAGACCATTTGCACTCAAACTCACTGCACTAAATACAAACCTATGTAATTAGTCCTTAACCTAGACTATCTGAACTTAACCTAGACATTTTCCCTTTCCCCTGTTAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1950431

TTAGGGTGTGTTTGGATGCACGTTGGATCAGGCCTGATCCACGTTTAAAGACCTCAAACGTGATTTTTCCATCTCCATTGATGTTTGGATGTTAAATGTTGATCCAATTCTGGCCCCAGAATTGGATCCATCCTAACACAACAATTTGTTGCTTTAGCATCAATGTTGATCCAATTGTCCCCTTTCCCTTTTACAGATCCAATTCAAGTCTATCAGATCCAATTCCTGATTAATGTATCCAAACATAAATCACGTCACTCAAACTCACGTTTACCAGATCCAATTCATATCAGATCCAATTCTGGCCAGATCCAATTCTACTAAACGCGAGCCAAACACACACTTA

Copy Cancel