Plant MITE

SE1920443

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4486
Lotus japonicus
SE1920443
Mutator
M60
CM0118:354361-354563
CAATTTGTG
A

Secondary structure and sequence

TSD TIR

5'

3'

C   T   GCAACAATGATATATACACACCTCCTTTTTTATACACTTCATTTCCACATATTTTTATCTCTATCTCTCTCCTCTTATCACTTATCACATCTTA
 AAT TGT                                                                                              
 ||| |||                                                                                               
 TGT TTA                                                                                              
G   -   ACCCTATTAATAAACAACTGTGGAGTTTTTACTCCACCTTACTCCACCTCCTTCTCTCTTTATCCTTCTTTACTTTTTTCATTCTCTCTTTCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920443

CAATTTGTGCAACAATGATATATACACACCTCCTTTTTTATACACTTCATTTCCACATATTTTTATCTCTATCTCTCTCCTCTTATCACTTATCACATCTTATACTTTCTCTCTTACTTTTTTCATTTCTTCCTATTTCTCTCTTCCTCCACCTCATTCCACCTCATTTTTGAGGTGTCAACAAATAATTATCCCAATTTGTG

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