Plant MITE

SE1910446

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4489
Lotus japonicus
SE1910446
Tc1/Mariner
St17
CM0245:349403-349720
TA
TACTCCCTCCGGTCCTTTTTATAAGAAACACTTTGGAGA

Secondary structure and sequence

TSD TIR

5'

3'

                            C    T   G TTTTTCTTGG     --        --- AACACT    TAAAATTAAGTCAAATAATCAATACCAATGCAAAGGGACTTATTCCCAATACAAAAATATGGAGGGAAATTGCAAGCACCCAATAGGTAT
TACTCCCTCCGGTCCTTTTTATAAGAAA ACTT GGA A          TCCTT  TTTATAAG   A      CTTA                                                                                          
|||||||||||||||||||||||||||| |||| ||| |          |||||  ||||||||   |      ||||                                                                                          G
ATGAGGGAGGCCAGGAAAAATATTCTTT TGAA CCT T          TAGTA  TTTGGTTC   T      ATTA                                                                                          
                            T    -   G --------TT     TG        TTT -----G    TAAAAAATATTTCAATTGATGATACGAATTAAGGTTACTACAAAAAAGGAAAAATATTCTTGTTAGTACGATTAATGGTATTTACAACTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1910446

TACTCCCTCCGGTCCTTTTTATAAGAAACACTTTGGAGATTTTTCTTGGTCCTTTTTATAAGAAACACTCTTATAAAATTAAGTCAAATAATCAATACCAATGCAAAGGGACTTATTCCCAATACAAAAATATGGAGGGAAATTGCAAGCACCCAATAGGTATGATCAACATTTATGGTAATTAGCATGATTGTTCTTATAAAAAGGAAAAAACATCATTGGAATTAAGCATAGTAGTTAACTTTATAAAAAATATTAGTTTTCTTGGTTTGTATGATTTTGTCCAAGTTTTTCTTATAAAAAGGACCGGAGGGAGTA

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