SE1930450

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4493
  • Lotus japonicus
  • SE1930450
  • hAT
  • Hat2
  • LjSGA_114704:42-556
  • GTCTTCAC
  • ACTAGAGCTGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCTTC            CGAATT       GCCCGCGGGCCGGCCCGCTTAACCCGCAGCCCGCGCGGGCTGTGGCCCGGTGATTGGTTGCCCGTTTAAAAGCGGGCCTACGCGGTCTGGCCCGCTTAACCCGCGAGTTCATGCGGGTTGAACCGCGGTTTTGCGGGCTGGACCGCATTACAAAAGAAAAAAATTTAAGTCATTTATTTGACAACTTTTGAGAAAAAAATTGACAACTTTGGAAAAAAAAATCAGTTTA
      ACTAGAGCTGGG      GGCCCGC                                                                                                                                                                                                                                     
      ||||||||||||      |||||||                                                                                                                                                                                                                                     T
      TGATCTCGACCC      ATACGCC                                                                                                                                                                                                                                     
CACTTC            ------       AATCTGGCGGGGCGTATCCGGGCGGGGCGCATTCGGGCGTGGCGCATCCGGGCGTGGCGCATCCGGGCGTAAATTTGCCCGGAGATAATGCGGCCAGGCGGGGGCGGGGCGCCTATTCGCCCGACCGGGCGCCCGGTGTTCGGTTTAATTTTTTATTATTTTTACTTTAAATTTTGATTTAATTTTTATAAAAAAAGTAATTTTTGGAATATTTGCGGATTTAATTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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