SE1920458

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4501
  • Lotus japonicus
  • SE1920458
  • Mutator
  • M60
  • CM0152:38787-38990
  • GGAAACTAT
  • TCAACAATGATATATACACACCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
GGAAACTA    C    A   A          ATTTTTT     CTTCATTTCCACCTTTTTTTGTTTCTATCTCTTTCCTCTTATCATCTATCAAATCTCATAC
        TCAA AATG TAT TACACACCTC       AAACA                                                             
        |||| |||| ||| ||||||||||       |||||                                                             T
        GGTT TTAC ATG ATGTGTGGAG       AGTAA                                                             
TATCAAAG    A    A   A          -------     ACTCCACCTTCTCCACTTTACTTCTCTCTCTATCCTTCTTTTCTTTTTCATTCTCTCTCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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