SE1930464

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4507
  • Lotus japonicus
  • SE1930464
  • hAT
  • Hat1
  • LjSGA_071938:990-1222
  • ATCAACGG
  • GGCAGGGCCGGCCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCAAC  -              CA     TGAGGCCTAAAGCCATCTTTAGAATGAGATCCTTTTTTCAGCATTTTTGACTTAGCATTAATGAATGCTTGATTTTTTTTGGGCATTT
      GG CAGGGCCGGCCCAA  CTAAA                                                                                        
      || ||||||||||||||  |||||                                                                                        T
      CT GTCCCGGCCGGGTT  CCCAT                                                                                        
 GGCAA  A              --     TTCGGTGGGTTCGTTCCCGAAATCCGGAGAGTTTTTTTTATAAAAAATGATTCCTTTTTTCCGGAGTTTTATAAAAAAATGATTCGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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