SE1950466

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4509
  • Lotus japonicus
  • SE1950466
  • PIF/harbinger
  • To27
  • CM0029:811811-812221
  • TAA
  • AGGGGGCGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            --TTAC    -------       AATGATACCCAGGAATCTTAATCCTAGGAATATTATGATGGAAATGTTATTCCAGGGCATCTTTTAAAAAAAGTGTTTGGTTAATAAATTCAATTCCCAGTTATGTTCTTAATAATTTTTTAGTTAAAATATTTAAAAATATAAAATTTGAAGTAGAAAGAAAAGTTTGTGG
  AGGGGGCGTTTG      AAGT       TTTAGAA                                                                                                                                                                            
  ||||||||||||      ||||       |||||||                                                                                                                                                                             
  TCCCCCGCAAAC      CCCT       TGTAAGG                                                                                                                                                                            
AA            CATCTT    AGAAACT       TTCCATTCATTCCAACCCTTACATTGTAAGGGTACAAACTATTTTCAAAATCTTTTTAATAAGAGTCCGTAATATCTAAGGGTCCGTACGTTAAATGTAACAAAAAGAGGTTAAAAGTAAGGGTACAAGTTGCCACCCATAGGATGTAAGGGTACCCTTACCTTCAATAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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