Plant MITE

SE1920470

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4513
Lotus japonicus
SE1920470
Mutator
M4
LjSGA_019867:696-925
TTCTAGAAA
TTCTAGAAAGGCTTAATTGCACATTTGATC

Secondary structure and sequence

TSD TIR

5'

3'

         A                  A  CCCT   C                    ATC         CA    T         -------     TTTTAGGGGACGATTTTCGCA
 TTCTAGAA GGCTTAATTGCACATTTG TC    AAC TTGCCCTTCTTGTGAAAATC   CCCCAACTA  AAAT AGCAAAAAC       CGTCC                     
 |||||||| |||||||||||||||||| ||    ||| ||||||||||||||||||||   |||||||||  |||| |||||||||       |||||                     A
 AAGATCTT CCGAATTAACGTGTAAAC AG    TTG AACGGGAAGGACGCTTTTAG   GGGGTTGAT  TTTA TCGTTTTTG       TTTCA                     
A        -                  C  --CC   A                    AAA         TC    T         AAAGGAC     AATGTGGGGTGGCAACAGAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920470

TTCTAGAAAGGCTTAATTGCACATTTGATCCCCTAACCTTGCCCTTCTTGTGAAAATCATCCCCCAACTACAAAATTAGCAAAAACCGTCCTTTTAGGGGACGATTTTCGCAAGAAGACAACGGTGGGGTGTAAACTTTCAGGAAAGTTTTTGCTTATTTCTTAGTTGGGGAAAGATTTTCGCAGGAAGGGCAAAGTTCCGACCAAATGTGCAATTAAGCCTTCTAGAAA

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