SE1950474

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4517
  • Lotus japonicus
  • SE1950474
  • PIF/harbinger
  • To22
  • CM0451:140413-140567
  • TAT
  • ATGGGTGTGTTTGGATTTCAGTTGAGATCAATTCGAAAGCACTTTCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
T    -          A        G G  CAA   G  A   C       CCAAC     CTAA     A TTTCACAT
 ATGG GTGTGTTTGG TTTCAGTT A AT   TTC AA GCA TTTCAAT     AGAAC    GAGTT C        
 |||| |||||||||| |||||||| | ||   ||| || ||| |||||||     |||||    ||||| |        T
 TATC CACACAAACC AAAGTCAA T TA   AAG TT TGT AAAGTTG     TTTTG    CTTAA G        
     A          A        G G  CGC   G  C   C       --ACT     --TG     A TTACACGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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