Plant MITE

SE0250001

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4518
Arabidopsis lyrata
SE0250001
PIF/harbinger
To1
scaffold_7:3488729-3488917
TAA
AGAGCATGATTAACAATGGTATCTTAAAAATGGTTTTTAG

Secondary structure and sequence

TSD TIR

5'

3'

TA   G   G        T           AAT         --AA  -    AAGTAATATATGACATGTGGTTGGTTCTTAAGGTTAGTTTTGGA
  AGA CAT ATTAACAA GGTATCTTAAA   GGTTTTTAG    GT ATTA                                            
  ||| ||| |||||||| |||||||||||   |||||||||    || ||||                                             
  TCT GTG TAATTGTT CCATAGAATTT   TCAAGAATT    CT TACA                                            
AA   G   G        C           --C         CATT  T    CCAAATCGATTCTGGGTTTTGATTCTTTTCACCGAATCGATTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0250001

TAAGAGCATGATTAACAATGGTATCTTAAAAATGGTTTTTAGAAGTATTAAAGTAATATATGACATGTGGTTGGTTCTTAAGGTTAGTTTTGGATCTTAGCTAAGCCACTTTTCTTAGTTTTGGGTCTTAGCTAAACCACATTTCTTACTTAAGAACTCTTTAAGATACCCTTGTTAATGGTGGTCTAA

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