SE0210002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4519
  • Arabidopsis lyrata
  • SE0210002
  • Tc1/Mariner
  • St1
  • scaffold_8:15558295-15558540
  • TA
  • TACTCCCTCCGTTTTAAATTAGTTGTCGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                               TAGAAG     TTTTGTTTCAAATTAGTTATCGTTTTAGGTTTTCAATGCATATTTTTGACAGATTTTTCAATTTTACCCCTAATCTCTTAGCT
TACTCCCTCCGTTTTAAATTAGTTGTCGTTT      TTGAA                                                                                   
|||||||||||||||||||||||||||||||      |||||                                                                                   T
ATGAGGGAGGCAAAATTTAATCAACAGCAAA      TCCAA                                                                                   
                               -----T     AAAAGTGCGAATAATTTTTTTGTAAGTTGAAAGAACAAAATGGGGATTAATTATATAATAAAATACATTATAATAATGAATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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