SE0230003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4520
  • Arabidopsis lyrata
  • SE0230003
  • hAT
  • Hat1
  • scaffold_4:19334268-19334531
  • CATATGTA
  • CATATGTACAGGGCCGGCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
        TA            AAACTA   GAG   CTAAAGCAAAAAAAAATTTGGCCCATTAACAAAAGCTGTTATAAAAAAAAATACAAGTTTTAACATGTATGGGATTCGAAACCGTGACCTGTACAACAAA
  CATATG  CAGGGCCGGCCC      TTT   TGC                                                                                                    
  ||||||  ||||||||||||      |||   |||                                                                                                    A
  GTATAC  GTCCCGGCCGGG      TAC   ATT                                                                                                    
AT      --            ------   -CC   TCGGGTACTTCGTTCCCGAAATCCGTAGTTTATTAATATTCATCAAAATCCCCGTAGTTAAAAATTTTACAATGACACCAGATCACCAATCTAACTTCAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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