SE0250009

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4526
  • Arabidopsis lyrata
  • SE0250009
  • PIF/harbinger
  • To4
  • scaffold_64:7142-7380
  • TAA
  • AGGGTGTGACTGGAAGACATTAATAGAAGAAAAGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             -A   CA    -     --  A     -AAA  T    TTA    ---     TACATTTACACCAGTCAAGAAGAAAATGTTTTCTTCTCAATTCTTCTGAAAAAGCCA
  AGGGTGTGACTGG  AGA  TTAA TAGAA  GA AAGAA    AG AGAA   GTTT   TCTTC                                                         
  |||||||||||||  |||  |||| |||||  || |||||    || ||||   ||||   |||||                                                         A
  TCCCACACTGACC  TTT  AATT ATCTT  CT TTCTT    TT CCTC   TCTT   TTATT                                                         
AA             AC   TA    C     AA  C     AATA  -    ---    CTT     TAAAAATCTTCTTAATAAAGATGAAATCAAAACATCTCCCTTTTAAAAGAGATGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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