SE0230011

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4528
  • Arabidopsis lyrata
  • SE0230011
  • hAT
  • Hat5
  • scaffold_5:5351627-5352313
  • CTCAGACG
  • TCAGACGTAGGCATGACCACGGTTACGGT

Secondary structure and sequence

TSD    TIR
5'



3'
 C  A  C             -C     - G  ---  ---    G TTACGGTCGATTAACCGCCGCTTACGGTTATAAATTTTCTTTAACCGTAACCTTAACCATTATATATACGGTTAAAACGGTTACGGTTAAATACGGTTACGGTTACAACGGTTACGGTTAAATACGGTTACAGTTATTTGATGATTACGATACGATTAATATCGGAGGTAAAATCTTACGAGTTACCTAACTTTTTATACTACTTTGAATAGAATAAAAAAGTATGTTATAAACAAATTTTCTTCATTTTTAGCAATCTAGCATTAGAACATATTTTTTTGAGAAAAAAACTATTTTTCCTA
  TC GA GTAGGCATGACCA  GGTTA C GT   TA   TTAC G                                                                                                                                                                                                                                                                                                              
  || || |||||||||||||  ||||| | ||   ||   |||| |                                                                                                                                                                                                                                                                                                               
  AG CT CATCCGTACTGGT  TCGAT G CA   GC   AAGC C                                                                                                                                                                                                                                                                                                              
GC  A  -             TT     T G  TTG  ATA    - TGGTATTGGCTTGGCAAAAAGTTGGCATTGGCCTGGCATTGACATATTTTGCCAATTTTTGGCATTGGCAATTGGCAGTTTTGTCTAATCAATGCCAATTTTTTATATGATTGGCATTGGCAGTTAATTGGCATTTACACAGTTTTGGCAATCAATTGGCATGCCAATTGGCGTGATAATTGGCGTATCAATTTTGAAAGTTTTATACTAACATCGACGCCTACTACGTTTTTGTTTAAAACTTACAAGTCTATTTCTAAAAGTTTTTTTCATTTACTATGGCGTGTAATTTTTTAGATGCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End