SE0230013

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4530
  • Arabidopsis lyrata
  • SE0230013
  • hAT
  • Hat6
  • scaffold_7:13635718-13635991
  • CCAGCTGG
  • CCAGCTGGCAGAGCCGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
                   CAACAAA       -   A    CAACAATTTTTTTTTGGACCTATAAAATTAATAAGCTAAAAAAAACTGAAAGTTTTATAAAGAGCAATAATGAGGCTTCGAAGCCTGCACCAACTTTC
CCAGCTGGCAGAGCCGGCC       TTTATGG GTC CAAA                                                                                                  
|||||||||||||||||||       ||||||| ||| ||||                                                                                                  T
GGTCGACCGTCTCGGCCGG       TCCCTGT CGA CTAC                                                                                                  
                   -----AA       C   -    TTCGTAGTCGAACACCGGGAGAATTTATATTCATTTAAAAGCCGGAGGTTAAAATTGTTTCATAGGAAATCAAGTCCACCAATGCAAATTCAATTACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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