Plant MITE

SE0230019

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4536
Arabidopsis lyrata
SE0230019
hAT
Hat10
scaffold_144:6105-6328
TATGCGGA
GCGGACAGTGGCGGA

Secondary structure and sequence

TSD TIR

5'

3'

TAT   G           TC    ATCAATTTCTAATGGGGTCAATATGTTATACGAAGAGAAAATAAAGGATTTAAACATATTTTAATGGGGTCAATATAAAGAATTTTAA
   GCG ACAGTGGCGGA  TAGA                                                                                        
   ||| |||||||||||  ||||                                                                                        G
   CGT TGTCACCGCCT  GATG                                                                                        
AGG   A           -C    CAATAACCATCACCCCAGTGAACTGGGGTTGTTGAAGAATTAAAATTGACTAAACGATAACTTTTAATTCTAATTTAATCTCTTATAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0230019

TATGCGGACAGTGGCGGATCTAGAATCAATTTCTAATGGGGTCAATATGTTATACGAAGAGAAAATAAAGGATTTAAACATATTTTAATGGGGTCAATATAAAGAATTTTAAGCATATTCTCTAATTTAATCTTAATTTTCAATAGCAAATCAGTTAAAATTAAGAAGTTGTTGGGGTCAAGTGACCCCACTACCAATAACGTAGCTCCGCCACTGTATGCGGA

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