Plant MITE

SE0210020

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4537
Arabidopsis lyrata
SE0210020
Tc1/Mariner
St3
scaffold_7:2577469-2577751
TA
TACTCCCTCTGTTCCTAAAAGGTTGAT

Secondary structure and sequence

TSD TIR

5'

3'

                  AA GT    GTTTTAGC     TT      C    AAGGT     TTC AGCAATTTTATTTTATTTTTATTGACTTATAATAGTAAATTGTAAACTTCAAGATACAATGATTATAAATCATTAACTTT
TACTCCCTCTGTTCCTAA  G  TGAT        TTTTG  GTTGTT CACA     TGATT   T                                                                                
||||||||||||||||||  |  ||||        |||||  |||||| ||||     |||||   |                                                                                 
ATGAGGGAGACAAGGATT  C  ACTA        AAAAC  CAACAG GTGT     TTCTT   G                                                                                
                  AA AA    -------A     CT      T    -ATAA     --- AGTTAGTAAGAAACTAGTAAAATTGTAACAAAAAATTAAAATTTATAAAAAATTATTAATAGTTGGTTATCATCAGATTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0210020

TACTCCCTCTGTTCCTAAAAGGTTGATGTTTTAGCTTTTGTTGTTGTTCCACAAAGGTTGATTTTCTAGCAATTTTATTTTATTTTTATTGACTTATAATAGTAAATTGTAAACTTCAAGATACAATGATTATAAATCATTAACTTTCTTAGACTACTATTGGTTGATAATTATTAAAAAATATTTAAAATTAAAAAACAATGTTAAAATGATCAAAGAATGATTGAGTTCTTAATATGTGTGACAACTCCAAAAAATCAAACAATTAGGAACAGAGGGAGTA

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