Plant MITE

SE0250022

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4539
Arabidopsis lyrata
SE0250022
PIF/harbinger
To6
scaffold_3:4529020-4529272
TTA
AGAGCATGTGCAGTGGTGAGTCTCTCACCAAAGTCTCTGATGTACAAAAGTATTACTAAAATAATAAATATTATTATTTAACTACATGAGTCTTTCAAAAAAGTGGAGAGAG

Secondary structure and sequence

TSD TIR

5'

3'

TT                 G         C  AAG     G     C                                    C                              TATTTCATAA      AT
  AGAGCATGTGCAGTGGT AGTCTCTCA CA   TCTCT ATGTA AAAAGTATTACTAAAATAATAAATATTATTATTTAA TACATGAGTCTTTCAAAAAAGTGGAGAGAG          TCTCTC  
  ||||||||||||||||| ||||||||| ||   ||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||          ||||||   
  TCTCGTACACGTCACCA TCAGAGAGT GT   AGAGA TACAT TTTTTATAATGATTTTATTATTTATAATAATAAATT ATGTACTCAGAGAGTTTTTTCACTTCTCTC          AGAGAG  
AT                 -         C  ATA     G     A                                    A                              ----------      TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0250022

TTAGAGCATGTGCAGTGGTGAGTCTCTCACCAAAGTCTCTGATGTACAAAAGTATTACTAAAATAATAAATATTATTATTTAACTACATGAGTCTTTCAAAAAAGTGGAGAGAGTATTTCATAATCTCTCATTTGAGAGACTCTCTTCACTTTTTTGAGAGACTCATGTAATTAAATAATAATATTTATTATTTTAGTAATATTTTTATACATGAGAGAATATGCTGAGAGACTACCACTGCACATGCTCTTA

Copy Cancel