SE0250023

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4540
  • Arabidopsis lyrata
  • SE0250023
  • PIF/harbinger
  • To7
  • scaffold_1:28742128-28742338
  • TTA
  • AGAGCATGATTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                     ------- CT     AAATTTTAAGATTATGTTAGCATTTAATTGATTATATTTATTCCCAAAAGTGCCTTTAAGCTAAGAAGTGTT
  AGAGCATGATTATATGTAGTC       T  TAAGA                                                                        
  |||||||||||||||||||||       |  |||||                                                                         
  TCTCGTACTAATAGGTTCCCG       T  TATGA                                                                        
AT                     AGAATTA --     AGAATTCTTATAAATTCATTATAAAAAAAACAAGGTGGAGAATCGTAAAAAAAAAAACAAGGAATCGATTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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