SE0250025

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4542
  • Arabidopsis lyrata
  • SE0250025
  • PIF/harbinger
  • To9
  • scaffold_7:7547726-7547953
  • TAA
  • AGGGCATCCGCAGTAGTGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G          A     TCCT  --C T        TCT     --------------------------------------------------------AAAATAC   A     GTAAAAGTTGTCTCTCTCTTCAC
  AGG CATCCGCAGT GTGTA    TG   G GGGGTGTA   ATTTT                                                               AGA ATAAT                       
  ||| |||||||||| |||||    ||   | ||||||||   |||||                                                               ||| |||||                        
  TCT GTAGGCGTCA CACAT    AC   C CCCCACAT   TAAAA                                                               GAA TGTGG                       
AA   G          C     TCAC  TCC T        -TC     AAAATAATAATATTAAATTTCACTCTCTCTTTTCTCTCTCTTTCTTTCTCTCTCTATCTCACC   -     GCTCACATTTGAATGTGGGCCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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