Plant MITE

SE0230026

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4543
Arabidopsis lyrata
SE0230026
hAT
Hat12
scaffold_6:21076631-21077206
GTTAGGAT
GATCCCTGTTCAAAA

Secondary structure and sequence

TSD TIR

5'

3'

GTTAG     C         A         --- GC -  CGCATAATCAGCGACTAGGCGCTCGGCGGTCAGGAGCCGCCGCGATTTCGTCAATTCGGCTAACAAATCGGGAAATGTTAGAAACTTTTATTTTTAGGGAAAATAAAGGTATAAATCAGTTTTTAAAGTATAGATCTATCATATTTGGGTAAAAATCACTAAAAATACAAGAGAAAACGATAATAATCGTGAGAAAAAAATGAAAACGGCTGAGATTAGGGTTTGACGTCGCATAGAATGATGATGAAGAC
     GATCC TGTTCAAAA CGCGGCTTC   C  G GC                                                                                                                                                                                                                                                           
     ||||| ||||||||| |||||||||   |  | ||                                                                                                                                                                                                                                                            
     TTGGG ACAAGTTTT TAGCGATCC   A  T AG                                                                                                                                                                                                                                                           
TAGGA     A         A         TCA -- C  CCCGCCACTCATGCCCGGATCGCTAATTAGCCTTTAGCCTTAATTTAGCCCCTAATTAGCCCCTAATTAAAAGTCATAAAAATAGCTGTATATACATATCTTTGATTTATAACCTTGTATTGAATTTCTTACTGAACCAGGTCACCGAACAACGCACATCCTTAGGATTGCTTGGCCCCAAGCTTGGAGCGTATACAAACAAAACCGAGAAAAAAAAAAAAGACCAAATGACTTTACTGTTTTTACGGGAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0230026

GTTAGGATCCCTGTTCAAAAACGCGGCTTCCGCGGCCGCATAATCAGCGACTAGGCGCTCGGCGGTCAGGAGCCGCCGCGATTTCGTCAATTCGGCTAACAAATCGGGAAATGTTAGAAACTTTTATTTTTAGGGAAAATAAAGGTATAAATCAGTTTTTAAAGTATAGATCTATCATATTTGGGTAAAAATCACTAAAAATACAAGAGAAAACGATAATAATCGTGAGAAAAAAATGAAAACGGCTGAGATTAGGGTTTGACGTCGCATAGAATGATGATGAAGACGAGGGCATTTTTGTCATTTCAGTAAACCAGAAAAAAAAAAAAGAGCCAAAACAAACATATGCGAGGTTCGAACCCCGGTTCGTTAGGATTCCTACACGCAACAAGCCACTGGACCAAGTCATTCTTTAAGTTATGTTCCAATATTTAGTTTCTATACATATATGTCGATAAAAATACTGAAAATTAATCCCCGATTAATCCCCGATTTAATTCCGATTTCCGATTAATCGCTAGGCCCGTACTCACCGCCCGACTAACTCCTAGCGATATTTTGAACAAGGGTTAGGAT

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