SE0230027

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4544
  • Arabidopsis lyrata
  • SE0230027
  • hAT
  • Hat13
  • scaffold_375:1046-1303
  • TGTATAAA
  • TGTATAAACAGGGCCGGCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
        AAC           TGA     AGCCCAACAAGCAAGGGTTTTAGGCGCCAAATATTATATAAGAATTTAAGGGCATCAAAATATAAAATTTCCCTTTAGTCCAGTGGCTGGCTCCTTCTTTAA
  TGTATA   AGGGCCGGCCC   CCTAA                                                                                                      
  ||||||   |||||||||||   |||||                                                                                                      T
  ATATGT   TCCCGGCCGGG   CTGTG                                                                                                      
AA      --A           ---     ACAACCCACGGATTTCGTTTAAAAAAAAAAAACGGGAATTTTTATATTTTTATTCACGATTCACAATGAATCGTTTCTGAACTTGAACACTATACTTCGTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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