Plant MITE

SE0230030

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4547
Arabidopsis lyrata
SE0230030
hAT
Hat14
scaffold_7:5013685-5013959
TGTGGACA
TGTGGACACAGAGCCGGCCCTT

Secondary structure and sequence

TSD TIR

5'

3'

   GG             C   -GA      --      AAGCATCTGCTTGTGGCCTCCAAATTATATAGTTGATATTCGGCCGCTTTTTTCTGAAAGTTTCATTGGTTCCACTGGTTAAGACTAAGAGTTACTCTTC
TGT  ACACAGAGCCGGC CTT   CACAGG  CAGATG                                                                                                    
|||  ||||||||||||| |||   ||||||  ||||||                                                                                                     
ACA  TGTGTCTCGGCCG GAA   CTATAA  CCGGTG                                                                                                    
   GG             A   ATT      TT      TTCGGGTAAAAAAAAAAACGGATGATATGTAATGAAAAAAACTTTTTCTGAACTTTTTGTCCTTTTTTTTACTTTACCCCTAAGCTAGGGAACTGGGAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0230030

TGTGGACACAGAGCCGGCCCTTGACACAGGCAGATGAAGCATCTGCTTGTGGCCTCCAAATTATATAGTTGATATTCGGCCGCTTTTTTCTGAAAGTTTCATTGGTTCCACTGGTTAAGACTAAGAGTTACTCTTCCAAGGGTCAAGGGATCGAATCCCCATTTCATTTTTTTTCCTGTTTTTCAAGTCTTTTTCAAAAAAAGTAATGTATAGTAGGCAAAAAAAAAAATGGGCTTGTGGCCTTAATATCTTAAAGAGCCGGCTCTGTGTGGACA

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