Plant MITE

SE0230031

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4548
Arabidopsis lyrata
SE0230031
hAT
Hat15
scaffold_7:18733303-18733864
GATGTTAA
GATGTTAATAGGCCTGGGC

Secondary structure and sequence

TSD TIR

5'

3'

        AA           ATAATACC  AACCCGAAGAACCGAATCGAACCCGACTTGAAAAACCCGACCCGAACCCGAATCCGAAGTTTTAAAATACCCGAACGGGTTCTAAACTTCACAACCCGAAAACCCGAACCCGAACCCGACCCGAATTCGAACCCGAACAAGTACCCGAACATATCCGAAATATAAATATATAGCTATAATATATTAGTAATATTTATACTTGTAATAACCTAAGTGTCTAAATTATTCGGATGTTAAGATATTTTCGGATGTTTTA
  GATGTT  TAGGCCTGGGC        CG                                                                                                                                                                                                                                                                
  ||||||  |||||||||||        ||                                                                                                                                                                                                                                                                 
  TTGTAG  ATCCGGACCCG        CA                                                                                                                                                                                                                                                                
AA      --           --------  AACCTATAAGCCCAGCCCAAGCCCAGCCCAAAAAGCCCAAGCCCAAAAAGCCTAAATCTTTTGATTCTGGGCAAGCCCATAAAATTTTGAAGCCCAAGCCTAGCCCAAACCTAGCCCATAAAGCCCAAGCCTAAGCCCAAATGGGCTTCATAGGTTTATAAATTTTTAAACATAGGCTAAGATACTTTTCATAACTTTTATGAGTCTTTTAGATATTTAAAATTCATAAAATATGGGATTAGATTGGTTTTCATCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0230031

GATGTTAATAGGCCTGGGCATAATACCCGAACCCGAAGAACCGAATCGAACCCGACTTGAAAAACCCGACCCGAACCCGAATCCGAAGTTTTAAAATACCCGAACGGGTTCTAAACTTCACAACCCGAAAACCCGAACCCGAACCCGACCCGAATTCGAACCCGAACAAGTACCCGAACATATCCGAAATATAAATATATAGCTATAATATATTAGTAATATTTATACTTGTAATAACCTAAGTGTCTAAATTATTCGGATGTTAAGATATTTTCGGATGTTTTAGCTACTTTTGGTTAGATTAGGGTATAAAATACTTAAAATTTATAGATTTTCTGAGTATTTTCAATACTTTTCATAGAATCGGATACAAATTTTTAAATATTTGGATACTTCGGGTAAACCCGAATCCGAACCCGAAATACCCGATCCAAACCCGATCCGAACCCGAAGTTTTAAAATACCCGAACGGGTCTTAGTTTTCTAAATCCGAAAAACCCGAACCCGAAAAACCCGACCCGAACCCGACCCGAATATCCAAACGCCCAGGCCTAGATGTTAA

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