Plant MITE

SE0230038

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4555
Arabidopsis lyrata
SE0230038
hAT
Hat15
scaffold_1:17354496-17355092
ACTATGGT
ACTATGGTTAGGCCTGGGCAT

Secondary structure and sequence

TSD TIR

5'

3'

                     G       TCG  T      C    C  GTCT -          - T   AAA    -  ACCCGT   GTTATATGTACAATTTCGGGTCGGGTTCGGTTCGAGTTCACTTCGGGTCCGAGTAATTCGGGTATTGGTTAAAGAACCCATAAATAACCAAAACTATTTCGGGTTTGAGTACTACTTACCCAAACTTTGTCCAAATATACCCAAACATACATAAAAGTATCCATAAAACCCGAAAAATCTGAAATTATAACAAGTTGTTCCTTAAGACAATAATATAAA
ACTATGGTTAGGCCTGGGCAT TGGGTAT   GG CGGGTT GGGT GG    T TCGGATTCGG G TAG   TTTT GG      TGG                                                                                                                                                                                                                           
||||||||||||||||||||| |||||||   || |||||| |||| ||    | |||||||||| | |||   |||| ||      |||                                                                                                                                                                                                                            
TGGTATCAATCCGGACCCGTA TTATGGG   TT GGGCTT TTGG TT    G CTTGGGCTGG C TTT   ATGG CT      TGG                                                                                                                                                                                                                           
                     -       --C  -      C    C  ---- G          G -   ---    G  ------   GTAAAATGAAGCCAAGGCCGATTAATAGGCTAGCCCAAGACAAAAGTTTATTGACACCCATAGCCCATAATGGGCTTGGCTTGGGCTATGGGTACTCATGAAAAATAATGGGCTTGTATATATGTGTATACTCCTGTATATACGTGATTATTGAACTTAAACACTGAACAAATTACTAAATTCAATACTTTTTTTGAGTTTTGTTCCAAATGAAGAACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0230038

ACTATGGTTAGGCCTGGGCATGTGGGTATTCGGGTCGGGTTCGGGTCGGGTCTTTCGGATTCGGGTTAGAAATTTTGGACCCGTTGGGTTATATGTACAATTTCGGGTCGGGTTCGGTTCGAGTTCACTTCGGGTCCGAGTAATTCGGGTATTGGTTAAAGAACCCATAAATAACCAAAACTATTTCGGGTTTGAGTACTACTTACCCAAACTTTGTCCAAATATACCCAAACATACATAAAAGTATCCATAAAACCCGAAAAATCTGAAATTATAACAAGTTGTTCCTTAAGACAATAATATAAAACAAGAAGTAAACCTTGTTTTGAGTTTTTTTCATAACTTAAATCATTAAACAAGTCACAAATTCAAGTTATTAGTGCATATATGTCCTCATATGTGTATATATGTTCGGGTAATAAAAAGTACTCATGGGTATCGGGTTCGGTTCGGGTAATACCCGATACCCACAGTTATTTGAAAACAGAACCCGATCGGATAATTAGCCGGAACCGAAGTAAAATGGGTTCGGGTATTTCGGGTCGGGTTCGGTTCGGTTCTTCGGGTTCGGGTATTATGCCCAGGCCTAACTATGGT

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