Plant MITE

SE0210039

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4556
Arabidopsis lyrata
SE0210039
Tc1/Mariner
St4
scaffold_5:11342853-11343105
TA
TACTCCCTCTGTTTCAATATATAGGAT

Secondary structure and sequence

TSD TIR

5'

3'

                 T     G   --ATTATA     TTTTTTTTGTTTCAAAATATAAGATGTTTTACAAATTTCTATGCAAATATTAAATGTATTTTATATTTTATGCTTATTTGTATTCTG
TACTCCCTCTGTTTCAA ATATA GAT        GGGAT                                                                                       
||||||||||||||||| ||||| |||        |||||                                                                                       C
ATGAGGGAGACAAAGTT TATAT CTA        ATTTT                                                                                       
                 T     A   CAAAATCA     CGTGTGTAAAATTCTTTAAACAAAAAAGAAATTTTCGAAAGTAAATTATAAATTAAAATTTTTTAAGTTGGTTACTATATTTTCTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0210039

TACTCCCTCTGTTTCAATATATAGGATATTATAGGGATTTTTTTTTGTTTCAAAATATAAGATGTTTTACAAATTTCTATGCAAATATTAAATGTATTTTATATTTTATGCTTATTTGTATTCTGCAGTCTTTTATATCATTGGTTGAATTTTTTAAAATTAAATATTAAATGAAAGCTTTTAAAGAAAAAACAAATTTCTTAAAATGTGTGCTTTTAACTAAAACATCATATATTTTGAAACAGAGGGAGTA

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