Plant MITE

SE0210042

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4559
Arabidopsis lyrata
SE0210042
Tc1/Mariner
St1
scaffold_1:4419505-4419748
TA
TACTCCCTCCGTTTCAGTTTAGTTGTCGTTTTAGGATTT

Secondary structure and sequence

TSD TIR

5'

3'

               AG    G         T       AAATTTTG       AT     --TC   -          AATGCAAATGT     G    TTCCAGTTTTATCCCTACAGTTTTAATGTTT
TACTCCCTCCGTTTC  TTTA TTGTCGTTT AGGATTT        TTTCATA  AGTTG    GGT TTAGGTTTTC           TTGGT AAAA                               
|||||||||||||||  |||| ||||||||| |||||||        |||||||  |||||    ||| ||||||||||           ||||| ||||                                
ATGAGGGAGGCAAAG  AAAT AACAGCAAA TTCTAAA        AAAGTGT  TTAAT    TCG AATTTAAAAG           TGAAA AATA                               
               CA    G         -       --------       GT     TCTT   T          -----ACAAAA     -    ATTATATAAAATATTTTTTAAAATAACCGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0210042

TACTCCCTCCGTTTCAGTTTAGTTGTCGTTTTAGGATTTAAATTTTGTTTCATAATAGTTGTCGGTTTAGGTTTTCAATGCAAATGTTTGGTGAAAATTCCAGTTTTATCCCTACAGTTTTAATGTTTTGGCCAATAAAATTTTTTATAAAATATATTAATAAAAAGTAAAACAGAAAATTTAATGCTTTCTTAATTTGTGTGAAAAAATCTTAAACGACAAGTAAAACGAAACGGAGGGAGTA

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